PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G359400.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 407aa    MW: 44295.3 Da    PI: 7.6863
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G359400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-17124173155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Brast02G359400.2.p 124 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 173
                         78*******************......55************************998 PP

2AP241.72.8e-13216266155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  Brast02G359400.2.p 216 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAAIRFNG 266
                         89********.7******...5...334336**********99**********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.9E-16124182IPR016177DNA-binding domain
CDDcd000184.27E-11124183No hitNo description
PfamPF008471.8E-9124173IPR001471AP2/ERF domain
SMARTSM003801.0E-31125187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-17125182IPR001471AP2/ERF domain
PROSITE profilePS5103217.622125181IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-17216275IPR016177DNA-binding domain
CDDcd000181.24E-25216276No hitNo description
PfamPF008478.5E-9216266IPR001471AP2/ERF domain
SMARTSM003802.3E-33217280IPR001471AP2/ERF domain
PROSITE profilePS5103216.252217274IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-16217275IPR001471AP2/ERF domain
PRINTSPR003671.1E-6218229IPR001471AP2/ERF domain
PRINTSPR003671.1E-6256276IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MVLDLNVESP AGSGSSSSSV LNNSGDAASA GSFRFGLLGS PADDEDCSAP PAFSSSGFVT  60
RQLFPPPPPL PPSAPGMMTM MAAPPASWQP RRAEDLGAVG QHQQQLATPA VAKKTRRGPR  120
SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGLEADINF  180
NLSDYEEDLK QMRNWTKEEF VHILRRQSTG FARGSSKYRG VTLHKCGRWE ARMGQLLGKK  240
YIYLGLFDSE VEAARAYDRA AIRFNGREAV TNFETSSYNG DALPDTETEA IVDADVLDLD  300
LRMSQPNAHD SKRDNIVAGL QLTFDSPESS SIMVSQERPM ERRPPESGGP LQPFPSWGWH  360
QVPAGGSSRS PLLHAAASSG FSTASGAAAQ QLPPFADHRF YFPPSA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6970020.0AB697002.1 Triticum aestivum q mRNA for transcription factor WAP2D, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559243.10.0PREDICTED: floral homeotic protein APETALA 2-like
SwissprotP479273e-92AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0Q3JJS80.0A0A0Q3JJS8_BRADI; Uncharacterized protein
STRINGBRADI1G03880.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.35e-89related to AP2.7